Index

B

BerkovichGeometry (class in molecular_builder.geometry)

BlockGeometry (class in molecular_builder.geometry) BoxGeometry (class in molecular_builder.geometry)

C

carve_geometry() (in module molecular_builder.core) cell2planes() (molecular_builder.geometry.Geometry static method)

create_bulk_crystal() (in module molecular_builder.core) CubeGeometry (class in molecular_builder.geometry) CylinderGeometry (class in molecular_builder.geometry)

D

distance_point_line() (molecular_builder.geometry.Geometry static method)

distance_point_plane() (molecular_builder.geometry.Geometry static method) DodecahedronGeometry (class in molecular_builder.geometry)

E

EllipsoidGeometry (class in molecular_builder.geometry)

EllipticalCylinderGeometry (class in molecular_builder.geometry) extract_box_properties() (molecular_builder.geometry.Geometry static method)

F

fetch_prepared_system() (in module molecular_builder.core)

fetch_system_from_url() (in module molecular_builder.core)

G

Geometry (class in molecular_builder.geometry)

M

module molecular_builder.core molecular_builder.geometry

molecular_builder.core module molecular_builder.geometry module

N

NotchGeometry (class in molecular_builder.geometry)

O

OctahedronGeometry (class in molecular_builder.geometry)

P

pack_water() (in module molecular_builder.core) packmol_structure() (molecular_builder.geometry.BerkovichGeometry method) (molecular_builder.geometry.BlockGeometry method) (molecular_builder.geometry.EllipticalCylinderGeometry method) (molecular_builder.geometry.Geometry method) (molecular_builder.geometry.PlaneBoundTriclinicGeometry method) (molecular_builder.geometry.PlaneGeometry method) (molecular_builder.geometry.ProceduralSurfaceGeometry method) (molecular_builder.geometry.ProceduralSurfaceGridGeometry method)

PlaneBoundTriclinicGeometry (class in molecular_builder.geometry) PlaneGeometry (class in molecular_builder.geometry) ProceduralSurfaceGeometry (class in molecular_builder.geometry) ProceduralSurfaceGridGeometry (class in molecular_builder.geometry)

R

read_data() (in module molecular_builder.core)

S

SphereGeometry (class in molecular_builder.geometry)

V

vec_and_point_to_plane() (molecular_builder.geometry.Geometry static method)

W

write() (in module molecular_builder.core)